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Staff Scientist / Postdoc – Tissue Clearing & 3D Image Analysis
Staff Scientist / Postdoc – Tissue Clearing & 3D Image AnalysisLMU Klinikum München • Greater Munich Metropolitan Area, Germany
Staff Scientist / Postdoc – Tissue Clearing & 3D Image Analysis

Staff Scientist / Postdoc – Tissue Clearing & 3D Image Analysis

LMU Klinikum München • Greater Munich Metropolitan Area, Germany
Vor 8 Tagen
Stellenbeschreibung

About us 🧠🔬

The Institute for Stroke and Dementia Research (ISD) at LMU Klinikum is a highly collaborative, international team at the interface between LMU and Helmholtz Munich . Our mission is to understand complex biology in 3D by combining tissue clearing, light-sheet microscopy, high-throughput analysis, and AI .

We are hiring a Staff Scientist – Tissue Clearing & Image Analysis (m / f / d) within the Mesoscale Hub of the DFG-funded Excellence Cluster SyNergy (Systems Neurology) .

The role at a glance ✨

This is a scientist role with a strong science-enabler and project-driver focus. You will run and evolve our tissue clearing + light-sheet imaging pipeline , support and manage collaborations across SyNergy , and translate complex data into robust, quantitative insight . In addition, you will contribute scientifically to a defined topic aligned with the Mesoscale Hub (with co-authorship on resulting publications).

What you’ll do ✅

  • Implement tissue-clearing projects in collaborative projects within the SyNergy Excellence Cluster
  • Support data analysis and visualization
  • Drive methods development
  • Develop new analysis pipelines in collaboration with our AI team 🤖
  • Lab support : maintenance of cutting-edge light-sheet microscopes
  • (Optional) Support with writing new animal experiment licenses

What we’re looking for 🎯

  • Strong background in tissue clearing and / or fluorescence microscopy
  • Hands-on experience with light-sheet systems and 3D imaging workflows
  • Proficiency with Imaris and / or arivis Vision4D ; experience with BigStitcher (or similar) for large volumes
  • Practical knowledge of atlas registration and quantitative analysis in cleared tissues
  • Image analysis / automation welcome (e.g., Fiji / ImageJ, Python batch processing, napari; basic ML / DL toolchains)
  • Advantageous but not required : FELASA B, animal experiment coordination, VR-based annotation tools / 3D proofreading
  • MSc or PhD in life sciences, biomedical engineering, optical physics, or related field
  • Excellent scientific English, strong organization, service mindset, and ability to keep multiple collaborations moving
  • Practical details 📍

  • Full-time
  • Location : Munich
  • Start date : 01 January 2026
  • Jobalert für diese Suche erstellen

    Scientist • Greater Munich Metropolitan Area, Germany

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