About us 🧠🔬
The Institute for Stroke and Dementia Research (ISD) at LMU Klinikum is a highly collaborative, international team at the interface between LMU and Helmholtz Munich . Our mission is to understand complex biology in 3D by combining tissue clearing, light-sheet microscopy, high-throughput analysis, and AI .
We are hiring a Staff Scientist – Tissue Clearing & Image Analysis (m / f / d) within the Mesoscale Hub of the DFG-funded Excellence Cluster SyNergy (Systems Neurology) .
The role at a glance ✨
This is a scientist role with a strong science-enabler and project-driver focus. You will run and evolve our tissue clearing + light-sheet imaging pipeline , support and manage collaborations across SyNergy , and translate complex data into robust, quantitative insight . In addition, you will contribute scientifically to a defined topic aligned with the Mesoscale Hub (with co-authorship on resulting publications).
What you’ll do ✅
- Implement tissue-clearing projects in collaborative projects within the SyNergy Excellence Cluster
- Support data analysis and visualization
- Drive methods development
- Develop new analysis pipelines in collaboration with our AI team 🤖
- Lab support : maintenance of cutting-edge light-sheet microscopes
- (Optional) Support with writing new animal experiment licenses
What we’re looking for 🎯
Strong background in tissue clearing and / or fluorescence microscopyHands-on experience with light-sheet systems and 3D imaging workflowsProficiency with Imaris and / or arivis Vision4D ; experience with BigStitcher (or similar) for large volumesPractical knowledge of atlas registration and quantitative analysis in cleared tissuesImage analysis / automation welcome (e.g., Fiji / ImageJ, Python batch processing, napari; basic ML / DL toolchains)Advantageous but not required : FELASA B, animal experiment coordination, VR-based annotation tools / 3D proofreadingMSc or PhD in life sciences, biomedical engineering, optical physics, or related fieldExcellent scientific English, strong organization, service mindset, and ability to keep multiple collaborations movingPractical details 📍
Full-timeLocation : MunichStart date : 01 January 2026